COBRApy is a package for constraint-based modeling of metabolic networks.
Computational synthetic biology: Predicting DNA edits for bioengineering
A python library for metabolic networks sampling and analysis
debugging biological networks to reach coherence, completeness and consistency
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Curation and analysis of metabolic models
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Open source genome-scale metabolic models of human and model animals
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Pathway Tools multiprocessing wrapper (for PathoLogic).
A Universal Modeling Language for Metabolic Flux Analysis
Genome-scale model of Yarrowia lipolytica.
R codes for creating metamapp graphs and files
MOOMIN is a tool for analysing differential expression data
🗺️ A repository of CNApy projects
Diversity-based enumeration of optimal context-specific metabolic networks
Kinetic modeling of glucose and acetate metabolisms in E. coli
TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
Python package and workflow for EFM calculation via (mp)lrs and efmtool
Add a description, image, and links to the metabolic-network topic page so that developers can more easily learn about it.
To associate your repository with the metabolic-network topic, visit your repo's landing page and select "manage topics."