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<code>compute_mutation_parents</code> errors when existing mutation parents don't make sense

bugSomething isn't workingSomething isn't working

Status: Open.

#3303 In tskit-dev/tskit;

· petrelharp opened on Oct 24, 2025

· 

Python 1.0

Document mutation mode and change site mode description

documentationDocumentationDocumentation

Status: Open.

#3302 In tskit-dev/tskit;

· gregorgorjanc opened on Oct 22, 2025

'mutation' mode for statistics

Status: Open.

#3299 In tskit-dev/tskit;

· petrelharp opened on Oct 16, 2025

Enable <code>alignments</code> on sc2ts ARG internal nodes

Status: Open.

#3293 In tskit-dev/tskit;

· jeromekelleher opened on Oct 14, 2025

· 

Python 1.0

Benchmarking the Two-Locus Framework and LD Calculator

Status: Open.

#3290 In tskit-dev/tskit;

· lkirk opened on Sep 29, 2025

decoding struct metadata does not check for proper length

Status: Open.

#3254 In tskit-dev/tskit;

· petrelharp opened on Aug 12, 2025

Writing a RateMap to text (hapmap)

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#3252 In tskit-dev/tskit;

· nspope opened on Aug 7, 2025

Finalise API for "skipping" on Tree.seek()

Status: Open.

#3251 In tskit-dev/tskit;

· jeromekelleher opened on Aug 7, 2025

· 

Python 0.6.5

<code>set_columns</code> recodes metadata schema

Status: Open.

#3249 In tskit-dev/tskit;

· petrelharp opened on Aug 7, 2025

Rename TreePosition (and C structs) to TreeIndexes

Status: Open.

#3245 In tskit-dev/tskit;

· jeromekelleher opened on Aug 4, 2025

get shared tree across an interval

Status: Open.

#3238 In tskit-dev/tskit;

· petrelharp opened on Jul 2, 2025

Warning on running setup.py

Status: Open.

Bug

#3233 In tskit-dev/tskit;

· jeromekelleher opened on Jun 25, 2025