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Tree.sites iterator isn't reversable

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#2117 In tskit-dev/tskit;

· jeromekelleher opened on Feb 3, 2022

Table collection returned by ts.tables not read-only.

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#760 In tskit-dev/tskit;

· jeromekelleher opened on Aug 10, 2020

Highlevel docs for time_units

documentationDocumentationDocumentation

Status: Open.

#1770 In tskit-dev/tskit;

· benjeffery opened on Oct 8, 2021

Document Pyodide/PyScript usage.

documentationDocumentationDocumentation

Status: Open.

#2262 In tskit-dev/tskit;

· benjeffery opened on May 11, 2022

Move reference documentation for "Variant" class

documentationDocumentationDocumentation

Status: Open.

#2406 In tskit-dev/tskit;

· hyanwong opened on Jul 14, 2022

Document RateMap etc

documentationDocumentationDocumentation

Status: Open.

#2679 In tskit-dev/tskit;

· hyanwong opened on Jan 10, 2023

Update docs for improved seek-from-null performance

C APIIssue is about the C APIIssue is about the C API

documentationDocumentationDocumentation

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#2740 In tskit-dev/tskit;

· jeromekelleher opened on Apr 14, 2023

Add docs discussing how to get a matrix of pairwise comparisons

Status: Open (in progress).

tskit-dev/tskitnumber 2776

#2776 In tskit-dev/tskit;

· hyanwong opened on Jul 5, 2023

write_vcf should use the reference sequence for REF, if present

Status: Open.

#2898 In tskit-dev/tskit;

· hyanwong opened on Feb 7, 2024

Add tests for genotype imputation

Status: Open (in progress).

tskit-dev/tskitnumber 2815

#2815 In tskit-dev/tskit;

· szhan opened on Aug 7, 2023

Unifying stat method desc and linking to math summary

Status: Open (in progress).

tskit-dev/tskitnumber 3005

#3005 In tskit-dev/tskit;

· gregorgorjanc opened on Sep 28, 2024

Generic iterator class for trees and variants

Status: Draft (not ready).

tskit-dev/tskitnumber 2762

#2762 In tskit-dev/tskit;

· hyanwong opened on Jun 13, 2023

Document divergence_matrix

documentationDocumentationDocumentation

Status: Open.

#2781 In tskit-dev/tskit;

· jeromekelleher opened on Jul 7, 2023

Update dev requirements

bugSomething isn't workingSomething isn't working

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Open.

#3134 In tskit-dev/tskit;

· agladstein opened on Apr 3, 2025

Currently <code>tables.sort()</code> does not always sort mutations into the required order

bugSomething isn't workingSomething isn't working

Status: Open.

#3253 In tskit-dev/tskit;

· hyanwong opened on Aug 11, 2025

Finalise API for "skipping" on Tree.seek()

Status: Open.

#3251 In tskit-dev/tskit;

· jeromekelleher opened on Aug 7, 2025