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  • University of chicago

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  1. CRI-Biocore/Spatial-Transcriptomics-Workshop-2025 CRI-Biocore/Spatial-Transcriptomics-Workshop-2025 Public

    HTML 2 2

  2. Fiberseq_PacBio_preprocessing Fiberseq_PacBio_preprocessing Public

    Pipeline for Pre-processing for PacBio generated Fiber-seq Data, helps with 5mC and 6mA base modification calling, alignment, phasing and nucleosome calling. This pipeline was designed for the Lab …

    Python

  3. Fiberseq_QC Fiberseq_QC Public

    Snakemake pipeline for Base and functional QC for Fiberseq analysis using PacBio and Nanopore data. This pipeline was designed for the Lab of Sebastian Pott at UC

    Python

  4. Fiberseq_Nanopore_preprocessing Fiberseq_Nanopore_preprocessing Public

    Pipeline for Pre-processing for Nanopore generated Fiber-seq Data, helps with 5mC and 6mA base modification calling, alignment, phasing and nucleosome calling. This pipeline was designed for the La…

    Python

  5. Spatial-Transcriptomics-Workshop-2025 Spatial-Transcriptomics-Workshop-2025 Public

    Forked from CRI-Biocore/Spatial-Transcriptomics-Workshop-2025

    Spatial Transcriptomics Workshop from the CRI

    HTML

  6. SNAPP SNAPP Public

    SNAPP sequencing data pipeline - haplotypes from targeted amplicon sequencing

    R 1