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gyorilab / depmap_analysis Public

forked from johnbachman/depmap_analysis

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Graphs from cogex#70

Merged

bgyori merged 24 commits intomastergyorilab/depmap_analysis:masterfrom

graphs-from-cogexgyorilab/depmap_analysis:graphs-from-cogexCopy head branch name to clipboard

Oct 20, 2025

Conversation Commits24 (24)Checks Files changed

Merged

Graphs from cogex#70
bgyori merged 24 commits intomasterfrom
graphs-from-cogex

Commits

Commits on Sep 26, 2025

Allow to set AWS buckets in config
kkaris
committed
Update logic to check if file exists before recalculating
kkaris
committed
Handle filenames and use pathlib.Path
kkaris
committed
Make inputs optional if just loading result
kkaris
committed
Update z-score weigth setting functions
kkaris
committed
Set z-scores and correlation weights on sif df directly
kkaris
committed
Use better parameter name
kkaris
committed
Restore mesh_id_dict for now
kkaris
committed
Update ontology edge addition
kkaris
committed
Set dtype for weight to avoid mixing types
kkaris
committed
Make date optional
kkaris
committed
Update docstring
kkaris
committed
Add clarifying comment in doctstring
kkaris
committed
Fix add logger messages
kkaris
committed
Setup numpy version agnostic longfloat
kkaris
committed
Update helpers getting sif and hash-mesh map data
kkaris
committed
Hide Pybel usage to make network search tests run easier
kkaris
committed
Add logp to SIF dictionary and update edge assertions
kkaris
committed
Add function to set edge level corr weight for DiGraphs
kkaris
committed
Update belief and correlation weights in graph processing
kkaris
committed
Remove any pandas <NA> in sif position column
kkaris
committed

Commits on Sep 30, 2025

Add residue/position to test SIF, add check of corr_weight assert logp not in statements dict
kkaris
committed
Restore file permissions
kkaris
committed
Add position/residue to test sif in tests/__init__.py
kkaris
committed

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