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Graphs from cogex #70

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Graphs from cogex #70

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09f93c7
Allow to set AWS buckets in config
kkaris Aug 16, 2024
807b34f
Update logic to check if file exists before recalculating
kkaris Apr 22, 2025
a580f31
Handle filenames and use pathlib.Path
kkaris Apr 22, 2025
ecfc7a2
Make inputs optional if just loading result
kkaris Apr 22, 2025
479bfdc
Update z-score weigth setting functions
kkaris May 27, 2025
ae824b9
Set z-scores and correlation weights on sif df directly
kkaris May 27, 2025
998f193
Use better parameter name
kkaris May 27, 2025
a202e40
Restore mesh_id_dict for now
kkaris May 27, 2025
b2aefef
Update ontology edge addition
kkaris May 27, 2025
f16a661
Set dtype for weight to avoid mixing types
kkaris May 27, 2025
e60f2de
Make date optional
kkaris May 27, 2025
9bdaf50
Update docstring
kkaris May 27, 2025
6397d4b
Add clarifying comment in doctstring
kkaris May 27, 2025
8272fe3
Fix add logger messages
kkaris Aug 12, 2025
fe6d039
Setup numpy version agnostic longfloat
kkaris Aug 13, 2025
b488db7
Update helpers getting sif and hash-mesh map data
kkaris Aug 13, 2025
c2ed6b9
Hide Pybel usage to make network search tests run easier
kkaris Aug 15, 2025
658ed08
Add logp to SIF dictionary and update edge assertions
kkaris Sep 22, 2025
93a6486
Add function to set edge level corr weight for DiGraphs
kkaris Sep 24, 2025
7ecb058
Update belief and correlation weights in graph processing
kkaris Sep 24, 2025
85d19b0
Remove any pandas <NA> in sif position column
kkaris Sep 24, 2025
9a26c51
Add residue/position to test SIF, add check of corr_weight assert log…
kkaris Sep 30, 2025
f4d6ff2
Restore file permissions
kkaris Sep 30, 2025
6962aa6
Add position/residue to test sif in tests/__init__.py
kkaris Sep 30, 2025
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