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Switch to "main" as default for <code>NF_CORE_MODULES_DEFAULT_BRANCH</code>

enhancement

Status: Open.

#3703 In nf-core/tools;

· imLew opened on Aug 6, 2025

Linting fails for cross-org subworkflows with meta.yml components using git_remote

bugSomething isn't workingSomething isn't working

Status: Open.

#3694 In nf-core/tools;

· tstark-cdc opened on Jul 29, 2025

Update AWS Mega Test CI workflow to use new variables for GPU and ARM Megatests

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

Enhancement

#3692 In nf-core/tools;

· edmundmiller opened on Jul 29, 2025

· 

3.4.0

Remove single-end from modules template

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#3691 In nf-core/tools;

· SPPearce opened on Jul 29, 2025

Lint for - example in modules keywords in the meta.yml

linting

modulesRelated to tools for working with DSL2 modulesRelated to tools for working with DSL2 modules

Status: Open.

#3690 In nf-core/tools;

· SPPearce opened on Jul 29, 2025

· 

3.4.0

Migrate to nf-core-utils plugin

Status: Open.

Task

#3685 In nf-core/tools;

· edmundmiller opened on Jul 22, 2025

· 

3.4.0

docker image build irregularly fails due to 403 from nf-test download

bugSomething isn't workingSomething isn't working

Status: Open.

#3684 In nf-core/tools;

· JulianFlesch opened on Jul 22, 2025

Fix linting with rocrate_readme_sync throws error if there is any changed file in directory

bugSomething isn't workingSomething isn't working

Status: Open.

#3683 In nf-core/tools;

· jonasscheid opened on Jul 22, 2025

Make ro-crate updated with the template README during sync

enhancement

Status: Open.

Enhancement

#3679 In nf-core/tools;

· ningyuxin1999 opened on Jul 15, 2025

schema_params linting is failing when a = is in the args

bugSomething isn't workingSomething isn't working

Status: Open.

#3672 In nf-core/tools;

· maxulysse opened on Jul 9, 2025

Handle pipelines without <code>manifest.contributors</code> in the <code>nextrflow.config</code> during pipeline sync

bugSomething isn't workingSomething isn't working

high-priority

Status: Open.

#3671 In nf-core/tools;

· mirpedrol opened on Jul 9, 2025

Modules yaml schemes don't follow nf-core releases

schema

Status: Open.

#3668 In nf-core/tools;

· AlexVCaron opened on Jul 7, 2025