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- Demultiplexing pipeline for sequencing data
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
- Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
- Assembly and intrahost/low-frequency variant calling for viral samples
mag
PublicAssembly and binning of metagenomes- Call and score variants from WGS/WES of rare disease patients.
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
- Detect iSNV and construct whole viral genomes from metagenomic samples
differentialabundance
Publicmhcquant
Publicepitopeprediction
Publiceager
PublicA fully reproducible and state-of-the-art ancient DNA analysis pipelinesarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)